PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG439800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 254aa    MW: 26720.3 Da    PI: 8.4902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG439800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1269115354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h e Er+RR+++N +f eLr  +P+       +++Ka+ L  A +YI +L
  Pavir.2NG439800.1.p  69 ASHVESERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAARYIAEL 115
                          5899***********************6.....49**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.76466115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-1669132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-1069115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1570128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.69E-1370120No hitNo description
SMARTSM003535.9E-1172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAAGENENDD VGAYYLVETP TPTPAAAGGV LSPADSELSK LILPSPSAPA APRRGRKPGP  60
RAAAGAAAAS HVESERQRRE KLNRRFCELR AAVPTVSRMD KASLLADAAR YIAELRARVA  120
QLEADADARH HAALARWEPA SAGGDDAGAA VGGELYVRKV GRDAAVVRVT SGARHAPAWL  180
MGALRSLELQ VQHACVSRVH GVTTQDVLVN LPDGAAALQD HDGLRGALLQ KDSMFLFVLS  240
RVLAFFYFCV SIA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270126e-50KJ727012.1 Zea mays clone pUT3993 bHLH transcription factor (bHLH109) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460537.12e-82hypothetical protein SORBIDRAFT_02g030110
TrEMBLC5X6062e-82C5X606_SORBI; Putative uncharacterized protein Sb02g030110
STRINGSb02g030110.17e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-23bHLH family protein